Basic Information
Locus ID:
BniB08g006640.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycosyl hydrolase family 38 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 3273371 | 3278813 | + | BniB08g006640.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 115,467.09 Da | 36.71 | 82.24 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 314 | 4.036E-179 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 351 | 5.7E-94 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 893 | 1001 | 1.3E-11 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 356 | 448 | 1.8E-22 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 595 | 811 | 8.4E-52 | IPR011682 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 455 | 1005 | 6.12E-142 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 352 | 4.45E-109 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 355 | 450 | 6.21E-29 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1180 | - | 467 | 593 | 2.8E-27 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 399 | 453 | 3.9E-22 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 594 | 859 | 1.2E-93 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 320 | 398 | 1.3E-30 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 319 | 2.0E-119 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 878 | 1008 | 4.6E-34 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 356 | 430 | 6.0E-25 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_018475686.1 | PREDICTED: probable alpha-mannosidase At5g13980 [Raphanus sativus] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0MUD8 | Alpha-mannosidase OS=Raphanus sativus OX=3726 GN=LOC108847366 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology