Basic Information
Locus ID:
BniB08g006560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
fizzy-related 3
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 3249583 | 3251780 | - | BniB08g006560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 53,206.09 Da | 48.32 | 70.33 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 205 | 464 | 5.86065E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 334 | 3.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 379 | 7.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 428 | 464 | 8.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 164 | 465 | 8.24E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 129 | 466 | 7.0E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 254 | 291 | 4.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 251 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 422 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 334 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 379 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 208 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 425 | 464 | 4.3E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 388 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 432 | 465 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 432 | 465 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 302 | 343 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 219 | 260 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 302 | 334 | 10.864685 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 451 | 465 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 170 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_013621985.1 | PREDICTED: protein FIZZY-RELATED 3 [Brassica oleracea var. oleracea] | 0 |
| Q8LPL5 | Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=FZR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816I2L4 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C03P07220.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology