Basic Information
Locus ID:
BniB08g006390.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
chromatin remodeling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 3138454 | 3146625 | - | BniB08g006390.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 232,732.70 Da | 55.24 | 73.40 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18659 | CD2_tandem | 508 | 560 | 9.58451E-17 | - |
| CDD | cd18793 | SF2_C_SNF | 910 | 1037 | 4.74825E-53 | - |
| CDD | cd18660 | CD1_tandem | 430 | 493 | 3.99618E-14 | - |
| CDD | cd15532 | PHD2_CHD_II | 24 | 65 | 8.36638E-23 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 916 | 1026 | 4.9E-17 | IPR001650 |
| Pfam | PF00628 | PHD-finger | 24 | 67 | 5.9E-10 | IPR019787 |
| Pfam | PF06465 | Domain of Unknown Function (DUF1087) | 1212 | 1247 | 5.1E-6 | IPR009463 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 510 | 560 | 8.8E-12 | IPR023780 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 611 | 889 | 3.6E-58 | IPR000330 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 455 | 495 | 7.2E-6 | IPR023780 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 17 | 70 | 6.42E-16 | IPR011011 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 499 | 564 | 3.53E-11 | IPR016197 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 822 | 1072 | 3.29E-62 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 577 | 820 | 1.13E-55 | IPR027417 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 459 | 496 | 6.41E-9 | IPR016197 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 1611 | 1658 | 5.6E-5 | IPR009057 |
| Gene3D | G3DSA:2.40.50.40 | - | 419 | 514 | 8.1E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 587 | 829 | 3.1E-182 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 90 | 2.6E-19 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 830 | 1057 | 3.1E-182 | IPR027417 |
| Gene3D | G3DSA:1.10.10.60 | - | 1578 | 1680 | 3.0E-9 | - |
| Gene3D | G3DSA:2.40.50.40 | - | 515 | 560 | 3.7E-10 | - |
| SMART | SM00298 | chromo_7 | 442 | 497 | 1.6E-8 | IPR000953 |
| SMART | SM01147 | DUF1087_2 | 1193 | 1253 | 2.6E-15 | IPR009463 |
| SMART | SM00490 | helicmild6 | 941 | 1026 | 1.4E-21 | IPR001650 |
| SMART | SM00298 | chromo_7 | 507 | 563 | 9.7E-12 | IPR000953 |
| SMART | SM00249 | PHD_3 | 23 | 66 | 6.5E-14 | IPR001965 |
| SMART | SM00487 | ultradead3 | 592 | 796 | 1.4E-38 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 915 | 1074 | 16.842726 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 608 | 785 | 22.536879 | IPR014001 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 509 | 570 | 11.471501 | IPR000953 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 21 | 68 | 10.282101 | IPR019787 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 443 | 495 | 10.403601 | IPR000953 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 24 | 65 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1969 | 2000 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1667 | 1684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1938 | 1961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1906 | 2087 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1667 | 1690 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1190 | 1209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2017 | 2032 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2033 | 2066 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1355 | 1370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1344 | 1370 | - | - |
| Coils | Coil | Coil | 348 | 368 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44800.1 | chromatin remodeling 4. | 0 |
| RefSeq | XP_009113890.1 | protein CHROMATIN REMODELING 4 isoform X1 [Brassica rapa] | 0 |
| F4KBP5 | Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana OX=3702 GN=CHR4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WPZ6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_005351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20920 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6170, gene_6171 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030129 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16043, Sbi_jg56949 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24706 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013711 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl71828, Sgl71829, Sgl75394 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007979, gene:ENSEOMG00000036380 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016160, CQ.Regalona.r1.7BG0020010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30079060 |
| Apiaceae | Apium graveolens | 3 | Ag6G01210, Ag6G01213, Ag7G01102 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012720, scaffold000767G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711432, gene-LOC103713520 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1054.V1.1, AsparagusV1_03.1055.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28642 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G44800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000738m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g09650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g016800.2N, BniB08g006390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1410 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1572 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g03500, gene.Cymno13g03520 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0280s00012.v1.0, Dusal.0357s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-3062, nbisL1-mrna-3063, nbisL1-mrna-3064 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.376 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012913 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G24837, Lb4G24843, Lb4G24844 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.3062, BH03.3235, BH03.3237, CH03.3433, Contig2801.2 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0143700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041223 |
| Poaceae | Oryza coarctata | 2 | Oco13G007840, Oco14G008360 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G284100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304117 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G006020, Chr24G007750, Chr27G011240, Chr28G007090 |
| Poaceae | Zea mays | 1 | Zm00001eb105480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-970 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6469 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.235, evm.TU.LG04.517 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1011 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10871 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-9244, nbisL1-mrna-9245 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.276 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004176 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7694 |
| Salicaceae | Populus euphratica | 3 | populus_peu03372, populus_peu34221, populus_peu34222 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621471 |
| Solanaceae | Solanum chilense | 1 | SOLCI005700300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011005 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5089_chr03_-, gene_16585 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2009 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20100.v3.1 |