Basic Information
Locus ID:
BniB08g006380.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 3129759 | 3137660 | + | BniB08g006380.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 178,136.91 Da | 38.75 | 82.34 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16568 | RING-HC_ScPSH1_like | 11 | 58 | 3.1692E-18 | - |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 863 | 981 | 7.4E-20 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 1113 | 1231 | 3.0E-11 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 1495 | 1614 | 2.6E-16 | IPR040847 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 1239 | 1360 | 4.0E-17 | IPR040847 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 12 | 57 | 5.7E-7 | IPR018957 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 1366 | 1487 | 1.7E-20 | IPR040847 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 488 | 569 | 3.6E-11 | IPR020683 |
| Pfam | PF18346 | Mind bomb SH3 repeat domain | 987 | 1107 | 6.2E-13 | IPR040847 |
| Pfam | PF00069 | Protein kinase domain | 162 | 421 | 1.3E-30 | IPR000719 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 701 | 786 | 8.0E-14 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 582 | 655 | 1.4E-7 | IPR020683 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 163 | 424 | 1.57E-48 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 495 | 798 | 9.44E-42 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 11 | 63 | 3.03E-11 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 449 | 575 | 5.9E-21 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 82 | 8.4E-16 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 576 | 881 | 2.4E-50 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 223 | 442 | 3.7E-43 | - |
| SMART | SM00248 | ANK_2a | 576 | 605 | 0.17 | IPR002110 |
| SMART | SM00248 | ANK_2a | 644 | 675 | 710.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 541 | 570 | 0.1 | IPR002110 |
| SMART | SM00248 | ANK_2a | 609 | 638 | 5.3 | IPR002110 |
| SMART | SM00248 | ANK_2a | 755 | 784 | 0.043 | IPR002110 |
| SMART | SM00248 | ANK_2a | 788 | 823 | 3600.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 507 | 537 | 5.4E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 682 | 717 | 4300.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 722 | 751 | 1.0E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 12 | 57 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 507 | 531 | 10.922203 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 541 | 568 | 8.852755 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 12 | 58 | 12.961374 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 541 | 573 | 9.53764 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 507 | 531 | 10.95327 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 755 | 787 | 11.3005 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 576 | 608 | 9.11028 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 722 | 754 | 13.73111 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 755 | 787 | 9.940542 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 722 | 753 | 12.752869 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 74 | 424 | 29.022062 | IPR000719 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 31 | 40 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 723 | 738 | 4.1E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 771 | 785 | 4.1E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 125 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13530.1 | protein kinases;ubiquitin-protein ligases. Encodes KEEP ON GOING (KEG), a RING E3 ligase involved in abscisic acid signaling. KEG is essential for Arabidopsis growth and development. ABA promotes KEG degradation via the ubiquitin dependent 26S proteasome pathway. | 0 |
| RefSeq | XP_018475743.1 | PREDICTED: E3 ubiquitin-protein ligase KEG isoform X1 [Raphanus sativus] | 0 |
| Q9FY48 | E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana OX=3702 GN=KEG PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0MV63 | RING-type E3 ubiquitin transferase OS=Raphanus sativus OX=3726 GN=LOC108847073 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26620, jg29897 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24422 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032315 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30023, Sbi_jg43462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18441 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004204 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66219, Sgl70535 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014968, gene:ENSEOMG00000019608 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0004540, CQ.Regalona.r1.2BG0005360 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165730 |
| Apiaceae | Apium graveolens | 2 | Ag6G02939, Ag8G01163 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G017600, COCNU_16G001660 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702563, gene-LOC103716443 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1826.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G11643 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012422m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g006380.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0902, Ceq05G1607 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0914, Cgl05G1603 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10300 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g01830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3156, nbisL1-mrna-7282 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2014, evm.TU.LG09.736 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039394 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02391, Lb7G35419 |
| Poaceae | Echinochloa crus-galli | 2 | AH05.2599, CH05.2772 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0374510, gene-QOZ80_5BG0421810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0064500.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_013688, gene-QYE76_071995 |
| Poaceae | Oryza coarctata | 2 | Oco09G008750, Oco10G008900 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g32570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G132900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505121 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G021240, Chr12G016680, Chr12G016690, Chr18G008360 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G405300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG036850, gene_TRIDC1BG041860 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G245000.3, TraesCS1B02G256200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287260_P002, Zm00001eb350870_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-12097, nbis-gene-14541, nbis-gene-14542 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28181 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1021, evm.TU.LG25.319 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g21000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.72 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28491 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1047 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14067, nbisL1-mrna-14068 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.289 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019135 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14989 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21475 |
| Salicaceae | Populus euphratica | 3 | populus_peu01794, populus_peu04229, populus_peu04230 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645371 |
| Solanaceae | Solanum chilense | 1 | SOLCI006813100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002366 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13741_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3920 |
| Zosteraceae | Zostera marina | 1 | Zosma01g27350.v3.1 |