Basic Information
Locus ID:
BniB08g004540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
heat shock
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 2235341 | 2236383 | - | BniB08g004540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 32,676.39 Da | 34.39 | 83.85 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16927 | HATPase_Hsp90-like | 9 | 182 | 2.27023E-100 | - |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 9 | 161 | 1.8E-14 | IPR003594 |
| Pfam | PF00183 | Hsp90 protein | 164 | 276 | 3.6E-35 | IPR001404 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 243 | 277 | 1.29E-5 | IPR020568 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 9 | 193 | 3.2E-63 | IPR036890 |
| Gene3D | G3DSA:3.30.565.10 | - | 2 | 209 | 8.4E-84 | IPR036890 |
| Gene3D | G3DSA:3.30.230.80 | - | 242 | 282 | 1.7E-9 | - |
| SMART | SM00387 | HKATPase_4 | 7 | 162 | 1.8E-5 | IPR003594 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 55 | 72 | 1.7E-68 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 6 | 28 | 1.7E-68 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 98 | 120 | 1.7E-68 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 73 | 90 | 1.7E-68 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 168 | 186 | 1.7E-68 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 150 | 167 | 1.7E-68 | IPR020575 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 218 | - | - |
| Coils | Coil | Coil | 207 | 237 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
map04217 (Necroptosis)
ko04612 (Antigen processing and presentation)
map04612 (Antigen processing and presentation)
map04621 (NOD-like receptor signaling pathway)
ko04626 (Plant-pathogen interaction)
map04626 (Plant-pathogen interaction)
map04657 (IL-17 signaling pathway)
map04659 (Th17 cell differentiation)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56030.1 | heat shock protein 81-2. A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Interacts with HsfA1d in the cytosol and the nucleus and negatively regulates HsfA1d. Did not bind to AtHsfA4c. | 0 |
| RefSeq | XP_009132345.2 | heat shock protein 90-2 [Brassica rapa] | 0 |
| P55737 | Heat shock protein 90-2 OS=Arabidopsis thaliana OX=3702 GN=HSP90-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3F0A1 | Heat shock protein 90-2 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR8829_c0_g1_i1_g.30469 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology