Basic Information
Locus ID:
BniB08g003920.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 1934087 | 1939734 | + | BniB08g003920.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 120,009.51 Da | 37.22 | 78.60 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 430 | 464 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 806 | 1072 | 3.43E-26 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 320 | 644 | 2.25E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 741 | 1079 | 2.8E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 287 | 493 | 1.8E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 494 | 661 | 5.0E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1030 | 1071 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 889 | 928 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 798 | 836 | 31.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.6E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 377 | 417 | 0.64 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 356 | 0.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 846 | 886 | 7.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 423 | 464 | 3.5E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.1E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 467 | 514 | 0.67 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 559 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 562 | 602 | 2.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 580 | 611 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.725525 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 430 | 473 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 35 | 92 | 10.927475 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 430 | 468 | 9.045603 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 451 | 465 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 292 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_018476374.1 | PREDICTED: topless-related protein 4-like [Raphanus sativus] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8X8BH34 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_005583 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology