Basic Information
Locus ID:
BniB08g003910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 1929420 | 1931970 | - | BniB08g003910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 65,875.90 Da | 49.38 | 85.72 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 268 | 560 | 4.66416E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 480 | 517 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 348 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 522 | 560 | 4.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 266 | 302 | 3.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 263 | 560 | 1.31E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 257 | 524 | 4.3E-58 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 525 | 576 | 2.7E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 351 | 390 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 2.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 476 | 518 | 0.85 | IPR001680 |
| SMART | SM00320 | WD40_4 | 434 | 472 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 392 | 432 | 2.4 | IPR001680 |
| SMART | SM00668 | ctlh | 98 | 155 | 7.4E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 521 | 561 | 1.9E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 348 | 1.7E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 528 | 563 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 316 | 352 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 305 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 305 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 316 | 357 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 103 | 155 | 10.309732 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 65 | 97 | 8.820586 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 528 | 563 | 14.217871 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 548 | 562 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 377 | 391 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 290 | 304 | 2.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_013629670.1 | PREDICTED: WD repeat-containing protein 26 [Brassica oleracea var. oleracea] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BD58 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_005584 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology