Basic Information
Locus ID:
BniB08g002220.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box LRR-repeat kelch-repeat protein At1g11620
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 1110820 | 1118366 | - | BniB08g002220.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 106,864.49 Da | 41.14 | 80.85 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 720 | 837 | 6.8E-18 | IPR006527 |
| Pfam | PF07734 | F-box associated | 556 | 710 | 2.1E-36 | IPR006527 |
| Pfam | PF00646 | F-box domain | 6 | 47 | 4.0E-10 | IPR001810 |
| Pfam | PF07734 | F-box associated | 191 | 372 | 5.2E-28 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 57 | 1.18E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 52 | 1.4E-8 | - |
| SMART | SM00256 | fbox_2 | 11 | 51 | 1.8E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 453 | 692 | 2.4E-46 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 90 | 325 | 2.1E-43 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 52 | 12.173404 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04690.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_048607657.1 | putative F-box only protein 15 [Brassica napus] | 0 |
| Q9S9V1 | Putative F-box only protein 15 OS=Arabidopsis thaliana OX=3702 GN=FBX15 PE=4 SV=1 | 0 | |
| TrEMBL | A0A3P5ZYD2 | F-box domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC3T12782H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT1G77650.1, AT1G77655.1, AT3G08750.1, AT3G10430.1 ... |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10000601m.g.v1.0, Thhalv10015788m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20410.v2.2, Sp6g23470.v2.2 |
| Brassicaceae | Brassica nigra | 17 | BniB01g054610.2N, BniB03g013050.2N, BniB03g013060.2N ... |