Basic Information
Locus ID:
BniB08g002090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 1018275 | 1019714 | - | BniB08g002090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 41,871.46 Da | 38.27 | 92.49 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 277 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 33 | 281 | 1.69E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 308 | 7.2E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 237 | 278 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 234 | 9.8E-4 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05150.1 | autophagy-related gene 18E. | 0 |
| RefSeq | XP_013724259.2 | autophagy-related protein 18e [Brassica napus] | 0 |
| Q9FHK8 | Autophagy-related protein 18e OS=Arabidopsis thaliana OX=3702 GN=ATG18E PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6AJD2 | WD_REPEATS_REGION domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC3T12805H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015259m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g002090.2N |