Basic Information
Locus ID:
BniB08g001910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
NOL
Description:
Belongs to the short-chain dehydrogenases reductases (SDR) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 911765 | 918709 | + | BniB08g001910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 97,505.45 Da | 48.26 | 86.49 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05233 | SDR_c | 81 | 301 | 1.6832E-53 | - |
| Pfam | PF08268 | F-box associated domain | 596 | 711 | 1.6E-25 | IPR013187 |
| Pfam | PF00106 | short chain dehydrogenase | 81 | 275 | 3.0E-44 | IPR002347 |
| Pfam | PF00646 | F-box domain | 405 | 439 | 1.1E-5 | IPR001810 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 80 | 298 | 4.77E-46 | IPR036291 |
| SUPERFAMILY | SSF81383 | F-box domain | 397 | 477 | 6.93E-12 | IPR036047 |
| Gene3D | G3DSA:3.40.50.720 | - | 80 | 310 | 7.6E-49 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 391 | 443 | 4.9E-5 | - |
| SMART | SM00256 | fbox_2 | 407 | 446 | 6.2E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 504 | 720 | 1.8E-37 | IPR017451 |
| ProSitePatterns | PS00061 | Short-chain dehydrogenases/reductases family signature. | 219 | 247 | - | IPR020904 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 80 | 97 | 2.0E-18 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 211 | 219 | 2.2E-5 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 232 | 251 | 2.2E-5 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 256 | 273 | 2.0E-18 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 155 | 166 | 2.2E-5 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 232 | 251 | 2.0E-18 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 205 | 221 | 2.0E-18 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 155 | 166 | 2.0E-18 | IPR002347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 403 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Reaction:
R08914 (7(1)-Hydroxychlorophyllide a + NAD+ <=> Chlorophyllide b + NADH + H+)
R08915 (7(1)-Hydroxychlorophyllide a + NADP+ <=> Chlorophyllide b + NADPH + H+)
R09069 (7(1)-Hydroxychlorophyll a + NAD+ <=> Chlorophyll b + NADH + H+)
R09070 (7(1)-Hydroxychlorophyll a + NADP+ <=> Chlorophyll b + NADPH + H+)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04900.1 | NYC1-like. Encodes a chlorophyll b reducatase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II). | 0 |
| RefSeq | XP_048607762.1 | putative F-box protein At1g50870 [Brassica napus] | 0 |
| Q8LEU3 | Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NOL PE=1 SV=1 | 0 | |
| TrEMBL | A0A816I4A1 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C03P02300.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1488 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11455 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006602 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg201, Sbi_jg36341 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4410 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00029155 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl25325, Sgl25326, Sgl30503 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010860, gene:ENSEOMG00000029459 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0013360, CQ.Regalona.r1.4BG0016080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168980 |
| Apiaceae | Apium graveolens | 1 | Ag6G01939 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G020930 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697059, gene-LOC120104100 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.473.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G22564 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G04900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013856m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37910.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g001910.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1595 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1630 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00450 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0103s00010.v1.0, Dusal.0103s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g10420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.872 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014731 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31532 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1289, BH01.1336, CH01.1384 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0223440, gene-QOZ80_3BG0268270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0332930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063274 |
| Poaceae | Oryza coarctata | 1 | Oco05G019290 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g45194.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G139600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104581, Pt_Chr0104618 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G009000, Chr07G024030, Chr12G028140 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G030900, Tel7E01G138500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG040840, gene_TRIDC4AG040850 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G261200.1, TraesCS4A02G299400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb218390_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20534 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3153 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2548, evm.TU.LG08.157, evm.TU.LG13.1033 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g01100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1214 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3874 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17282 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18779 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.492 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005950 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12395 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5509 |
| Salicaceae | Populus euphratica | 1 | populus_peu06036 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608726 |
| Solanaceae | Solanum chilense | 1 | SOLCI005800600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020324 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_18011 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1377 |
| Zosteraceae | Zostera marina | 1 | Zosma05g32990.v3.1 |