Basic Information
Locus ID:
BniB08g001250.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CTR1
Description:
Ethylene-responsive protein kinase Le-CTR1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 589893 | 594301 | - | BniB08g001250.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 88,017.70 Da | 50.17 | 80.44 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 536 | 784 | 8.06474E-132 | - |
| Pfam | PF14381 | Ethylene-responsive protein kinase Le-CTR1 | 191 | 395 | 1.8E-77 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 531 | 783 | 4.3E-72 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 518 | 784 | 8.9E-83 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 523 | 608 | 2.5E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 609 | 797 | 2.5E-64 | - |
| SMART | SM00220 | serkin_6 | 530 | 788 | 5.8E-67 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 530 | 788 | 46.336212 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 536 | 557 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 651 | 663 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 604 | 617 | 1.0E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 711 | 733 | 1.0E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 692 | 702 | 1.0E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 755 | 777 | 1.0E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 645 | 663 | 1.0E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 47 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03730.1 | Protein kinase superfamily protein. Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed. | 0 |
| RefSeq | XP_022554176.1 | serine/threonine-protein kinase CTR1 [Brassica napus] | 0 |
| Q05609 | Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana OX=3702 GN=CTR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WSF4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_005805 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology