Basic Information
Locus ID:
BniB08g000890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UPL4
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 436493 | 442806 | + | BniB08g000890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 166,763.73 Da | 49.59 | 92.14 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1114 | 1496 | 4.0019E-128 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1160 | 1498 | 5.4E-88 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1108 | 1491 | 2.88E-100 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 104 | 541 | 1.09E-36 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1382 | 1496 | 4.4E-35 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1058 | 1275 | 1.7E-38 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 548 | 3.9E-51 | IPR011989 |
| SMART | SM00119 | hect_3 | 1126 | 1498 | 4.0E-105 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1128 | 1498 | 66.736343 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 857 | 879 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 62 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_048607722.1 | E3 ubiquitin-protein ligase UPL4 [Brassica napus] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0D3AZH5 | HECT-type E3 ubiquitin transferase OS=Brassica oleracea var. oleracea OX=109376 GN=106334874 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology