Basic Information
Locus ID:
BniB08g000430.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 187352 | 188055 | + | BniB08g000430.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 23,199.19 Da | 66.26 | 57.79 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 76 | 128 | 5.67724E-13 | - |
| Pfam | PF12906 | RING-variant domain | 76 | 127 | 8.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 129 | 2.47E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 137 | 1.5E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 75 | 128 | 1.2E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 68 | 134 | 18.908411 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01070.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_018475230.1 | PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Raphanus sativus] | 0 |
| TrEMBL | A0A6J0MRX7 | E3 ubiquitin-protein ligase MARCH8-like OS=Raphanus sativus OX=3726 GN=LOC108846499 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology