Basic Information
Locus ID:
BniB08g000370.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA polymerase II C-terminal domain phosphatase-like 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 164912 | 168753 | + | BniB08g000370.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 84,965.78 Da | 50.60 | 81.87 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 655 | 718 | 1.4681E-12 | - |
| CDD | cd07521 | HAD_FCP1-like | 249 | 365 | 4.4022E-22 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 255 | 365 | 2.3E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 656 | 718 | 8.0E-9 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 132 | 391 | 1.15E-22 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 656 | 719 | 3.47E-13 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 651 | 724 | 8.4E-12 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 133 | 409 | 6.5E-29 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 655 | 719 | 5.2E-9 | IPR014720 |
| SMART | SM00577 | forpap2 | 198 | 374 | 3.0E-14 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 390 | 19.839249 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 654 | 720 | 13.106365 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 488 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_018475234.1 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Raphanus sativus] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6J0MSV2 | protein-serine/threonine phosphatase OS=Raphanus sativus OX=3726 GN=LOC108846503 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology