Basic Information
Locus ID:
BniB08g000060.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B8 | 20197 | 24796 | + | BniB08g000060.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 104,988.00 Da | 40.64 | 94.48 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 628 | 891 | 5.54455E-89 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 70 | 3.3E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 625 | 886 | 1.5E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 595 | 889 | 7.85E-76 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 49 | 383 | 5.27E-54 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 698 | 917 | 1.7E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 583 | 697 | 5.5E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 198 | 9.3E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 199 | 267 | 2.1E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 268 | 395 | 3.3E-20 | IPR032675 |
| SMART | SM00220 | serkin_6 | 622 | 891 | 7.5E-38 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 622 | 892 | 38.463573 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 628 | 650 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 742 | 754 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 911 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01950.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_048607683.1 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Brassica napus] | 0 |
| C0LGD7 | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana OX=3702 GN=At1g06840 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8BHK8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_006258 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology