HalophFGD

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Basic Information
Locus ID: BniB07g062030.2N
Species & Taxonomic ID: Brassica nigra & 3710
Genome Assembly: N100
Description: BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
Chromosome Start End Strand ID
B7 57823708 57834611 - BniB07g062030.2N
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.92 224,917.70 Da 45.66 75.46 -0.15
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF03107 C1 domain 501 543 2.0E-6 IPR004146
Pfam PF03107 C1 domain 683 729 1.5E-8 IPR004146
Pfam PF03107 C1 domain 555 601 5.5E-7 IPR004146
Pfam PF03107 C1 domain 298 345 5.7E-7 IPR004146
Pfam PF03107 C1 domain 743 789 7.5E-7 IPR004146
Pfam PF03107 C1 domain 126 172 4.8E-6 IPR004146
Pfam PF03107 C1 domain 1294 1339 2.2E-8 IPR004146
Pfam PF03107 C1 domain 855 898 6.5E-7 IPR004146
Pfam PF03107 C1 domain 1778 1824 7.4E-8 IPR004146
Pfam PF03107 C1 domain 798 841 6.7E-6 IPR004146
Pfam PF03107 C1 domain 1608 1659 4.2E-8 IPR004146
Pfam PF03107 C1 domain 908 955 6.0E-7 IPR004146
Pfam PF03107 C1 domain 991 1043 6.1E-9 IPR004146
Pfam PF03107 C1 domain 381 434 2.9E-9 IPR004146
Pfam PF03107 C1 domain 1525 1572 1.0E-7 IPR004146
Pfam PF03107 C1 domain 1473 1514 4.3E-7 IPR004146
Pfam PF03107 C1 domain 1353 1399 2.8E-6 IPR004146
Pfam PF03107 C1 domain 1165 1211 1.4E-6 IPR004146
Pfam PF03107 C1 domain 68 112 1.1E-7 IPR004146
SUPERFAMILY SSF57889 Cysteine-rich domain 1130 1217 8.64E-20 -
SUPERFAMILY SSF57889 Cysteine-rich domain 826 911 9.42E-16 -
SUPERFAMILY SSF57889 Cysteine-rich domain 212 301 9.77E-12 -
SUPERFAMILY SSF57889 Cysteine-rich domain 712 791 1.78E-12 -
SUPERFAMILY SSF57889 Cysteine-rich domain 1025 1112 1.26E-5 -
SUPERFAMILY SSF57889 Cysteine-rich domain 325 442 3.89E-17 -
SUPERFAMILY SSF57889 Cysteine-rich domain 37 116 1.63E-14 -
SUPERFAMILY SSF57889 Cysteine-rich domain 1263 1342 6.28E-10 -
SUPERFAMILY SSF57889 Cysteine-rich domain 935 1052 1.94E-16 -
SUPERFAMILY SSF57889 Cysteine-rich domain 419 503 4.39E-5 -
SUPERFAMILY SSF57889 Cysteine-rich domain 525 607 3.77E-19 -
SUPERFAMILY SSF57889 Cysteine-rich domain 1440 1528 7.32E-16 -
SUPERFAMILY SSF57889 Cysteine-rich domain 1641 1727 7.85E-8 -
SUPERFAMILY SSF57889 Cysteine-rich domain 1552 1667 1.09E-15 -
SUPERFAMILY SSF57889 Cysteine-rich domain 95 183 2.72E-13 -
SUPERFAMILY SSF57889 Cysteine-rich domain 653 734 4.78E-13 -
SUPERFAMILY SSF57889 Cysteine-rich domain 1323 1402 1.15E-11 -
SUPERFAMILY SSF57889 Cysteine-rich domain 1743 1829 2.24E-19 -
SMART SM00109 c1_12 1779 1835 0.26 IPR002219
SMART SM00109 c1_12 299 350 0.4 IPR002219
SMART SM00109 c1_12 556 612 0.13 IPR002219
SMART SM00109 c1_12 744 799 0.23 IPR002219
SMART SM00109 c1_12 391 439 0.37 IPR002219
SMART SM00109 c1_12 1526 1577 0.012 IPR002219
SMART SM00109 c1_12 127 182 0.1 IPR002219
SMART SM00109 c1_12 1166 1222 0.086 IPR002219
SMART SM00109 c1_12 1008 1048 0.72 IPR002219
SMART SM00184 ring_2 1740 1799 12.0 IPR001841
SMART SM00249 PHD_3 1631 1690 13.0 IPR001965
SMART SM00249 PHD_3 572 616 3.3 IPR001965
SMART SM00249 PHD_3 1371 1452 3.2 IPR001965
SMART SM00249 PHD_3 761 834 1.8 IPR001965
SMART SM00249 PHD_3 1795 1839 10.0 IPR001965
SMART SM00249 PHD_3 1182 1226 3.3 IPR001965
SMART SM00249 PHD_3 144 224 2.3 IPR001965
SMART SM00249 PHD_3 406 468 2.2 IPR001965
SMART SM00249 PHD_3 1015 1074 14.0 IPR001965
SMART SM00184 ring_2 145 209 1.2 IPR001841
SMART SM00184 ring_2 1127 1186 6.1 IPR001841
SMART SM00109 c1_12 1610 1664 0.51 IPR002219
SMART SM00109 c1_12 909 960 0.062 IPR002219
SMART SM00184 ring_2 1372 1437 1.6 IPR001841
SMART SM00184 ring_2 573 615 5.1 IPR001841
SMART SM00184 ring_2 407 464 18.0 IPR001841
SMART SM00184 ring_2 762 819 0.97 IPR001841
SMART SM00109 c1_12 1354 1409 0.81 IPR002219
Gene Ontology
Biological Process:
GO:0035556 (intracellular signal transduction)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G59920.1 Cysteine/Histidine-rich C1 domain family protein. Isolated in a screen for UV-B insensitive mutants using a hypocotyl growth inhibition assay. Mutants are defective in a number of UV-B responses. 0
RefSeq XP_018437543.1 PREDICTED: uncharacterized protein LOC108809905 [Raphanus sativus] 0
TrEMBL A0A8S9HFZ9 Phorbol-ester/DAG-type domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q68_00018308 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 6 jg35663, jg8188, jg8412, jg8450, jg8451, jg8457
Apiaceae Apium graveolens 5 Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874
Asteraceae Flaveria trinervia 12 Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ...
Ftri1G15699, Ftri1G31999, Ftri3G08687, Ftri3G10138, Ftri6G30596, Ftri8G05177, Ftri8G13431, Ftri8G27137
Brassicaceae Arabidopsis thaliana 35 AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ...
AT2G43220.1, AT3G06990.1, AT3G07000.1, AT3G45840.1, AT3G46800.1, AT3G46810.1, AT3G48400.1, AT4G01350.1, AT4G01740.1, AT4G01760.1, AT4G01910.1, AT4G01920.1, AT4G01925.1, AT4G01930.1, AT4G02180.1, AT4G02190.1, AT4G09690.1, AT4G11390.1, AT4G11540.1, AT4G11550.1, AT4G13992.1, AT4G16015.1, AT5G16430.1, AT5G22355.1, AT5G26190.1, AT5G37620.1, AT5G40320.1, AT5G45730.1, AT5G59920.1, AT5G59930.1, AT5G59940.1
Brassicaceae Eutrema salsugineum 34 Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ...
Thhalv10002432m.g.v1.0, Thhalv10003740m.g.v1.0, Thhalv10003743m.g.v1.0, Thhalv10003754m.g.v1.0, Thhalv10003760m.g.v1.0, Thhalv10003761m.g.v1.0, Thhalv10005293m.g.v1.0, Thhalv10005296m.g.v1.0, Thhalv10005411m.g.v1.0, Thhalv10007210m.g.v1.0, Thhalv10009528m.g.v1.0, Thhalv10009889m.g.v1.0, Thhalv10012095m.g.v1.0, Thhalv10012175m.g.v1.0, Thhalv10012196m.g.v1.0, Thhalv10012912m.g.v1.0, Thhalv10012915m.g.v1.0, Thhalv10016311m.g.v1.0, Thhalv10022573m.g.v1.0, Thhalv10023179m.g.v1.0, Thhalv10024646m.g.v1.0, Thhalv10027008m.g.v1.0, Thhalv10027103m.g.v1.0, Thhalv10027671m.g.v1.0, Thhalv10028079m.g.v1.0, Thhalv10028133m.g.v1.0, Thhalv10028236m.g.v1.0, Thhalv10028242m.g.v1.0, Thhalv10028254m.g.v1.0, Thhalv10028534m.g.v1.0, Thhalv10029207m.g.v1.0, Thhalv10029489m.g.v1.0
Brassicaceae Schrenkiella parvula 5 Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ...
Sp7g01410.v2.2, Sp7g16340.v2.2
Brassicaceae Brassica nigra 39 BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ...
BniB01g026650.2N, BniB01g058940.2N, BniB01g058950.2N, BniB01g058960.2N, BniB01g058970.2N, BniB02g015730.2N, BniB02g039660.2N, BniB02g042710.2N, BniB02g050650.2N, BniB02g051320.2N, BniB02g067650.2N, BniB02g067710.2N, BniB03g040730.2N, BniB04g024850.2N, BniB04g024860.2N, BniB05g007940.2N, BniB05g017310.2N, BniB05g018620.2N, BniB05g020320.2N, BniB06g008470.2N, BniB06g023060.2N, BniB07g033480.2N, BniB07g033740.2N, BniB07g058140.2N, BniB07g060150.2N, BniB07g062010.2N, BniB07g062030.2N, BniB08g009490.2N, BniB08g012030.2N, BniB08g012050.2N, BniB08g022020.2N, BniB08g038300.2N, BniB08g044670.2N, BniB08g044680.2N, BniB08g044720.2N, BniB08g045080.2N
Casuarinaceae Casuarina equisetifolia 17 Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ...
Ceq04G0075, Ceq04G0556, Ceq04G2464, Ceq04G2468, Ceq05G2487, Ceq05G2489, Ceq06G0228, Ceq07G2160, Ceq07G2257, Ceq08G0108, Ceq08G0138, Ceq09G0291
Casuarinaceae Casuarina glauca 23 Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ...
Cgl04G0632, Cgl04G0634, Cgl04G0672, Cgl04G2695, Cgl05G2333, Cgl05G2698, Cgl07G1743, Cgl07G2340, Cgl07G2349, Cgl07G2372, Cgl07G2373, Cgl07G2522, Cgl08G0162, Cgl08G0163, Cgl08G0167, Cgl08G2652, Cgl09G0326, Cgl09G0327
Malvaceae Hibiscus hamabo Siebold & Zucc. 6 nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ...
nbisL1-mrna-8118, nbisL1-mrna-8119, nbisL1-mrna-8190
Plumbaginaceae Limonium bicolor 1 Lb3G17998
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-17876
Salicaceae Populus euphratica 4 populus_peu26078, populus_peu26197, populus_peu26198 ...
populus_peu26199
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