Basic Information
Locus ID:
BniB07g061920.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 57757455 | 57760452 | + | BniB07g061920.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 66,563.50 Da | 51.57 | 71.23 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 366 | 495 | 3.05791E-62 | - |
| CDD | cd00201 | WW | 18 | 47 | 7.73441E-5 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 171 | 340 | 1.0E-47 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 378 | 486 | 8.7E-33 | IPR001650 |
| Pfam | PF00397 | WW domain | 17 | 47 | 4.2E-7 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 10 | 49 | 2.38E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 219 | 504 | 2.95E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 124 | 356 | 5.1E-86 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 12 | 66 | 3.7E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 357 | 528 | 1.7E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 166 | 369 | 1.8E-62 | IPR014001 |
| SMART | SM00490 | helicmild6 | 402 | 486 | 1.1E-32 | IPR001650 |
| SMART | SM00456 | ww_5 | 16 | 49 | 5.4E-6 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 381 | 525 | 25.307705 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 147 | 175 | 11.056714 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 15 | 49 | 11.3293 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 178 | 352 | 29.553617 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 21 | 47 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 298 | 306 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 68 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_018440157.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 14-like [Raphanus sativus] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0JWW0 | DEAD-box ATP-dependent RNA helicase 14-like OS=Raphanus sativus OX=3726 GN=LOC108812402 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology