Basic Information
Locus ID:
BniB07g061470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PCI domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 57472361 | 57477666 | - | BniB07g061470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 165,709.39 Da | 35.77 | 98.11 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1238 | 1506 | 2.86302E-87 | - |
| Pfam | PF13855 | Leucine rich repeat | 1019 | 1077 | 6.6E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 395 | 435 | 2.8E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 1234 | 1432 | 6.0E-45 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 620 | 642 | 0.0035 | IPR001611 |
| Pfam | PF01399 | PCI domain | 252 | 353 | 7.8E-13 | IPR000717 |
| SUPERFAMILY | SSF52058 | L domain-like | 942 | 1105 | 2.72E-34 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 491 | 850 | 1.88E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1212 | 1503 | 1.09E-73 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 889 | 1121 | 6.1E-50 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 598 | 703 | 1.5E-29 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1194 | 1307 | 1.1E-28 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 706 | 846 | 2.3E-21 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1308 | 1508 | 1.5E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 395 | 597 | 2.2E-46 | IPR032675 |
| SMART | SM00220 | serkin_6 | 1232 | 1510 | 3.5E-34 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 1016 | 1039 | 89.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 991 | 1015 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 666 | 690 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 548 | 571 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1064 | 1087 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 524 | 547 | 86.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 572 | 596 | 71.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1040 | 1063 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 618 | 642 | 150.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1232 | 1506 | 39.240944 | IPR000719 |
| ProSiteProfiles | PS50250 | PCI domain profile. | 187 | 356 | 15.021084 | IPR000717 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1352 | 1364 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1238 | 1260 | - | IPR017441 |
| Hamap | MF_03012 | COP9/Signalosome and eIF3 complex-shared subunit 1 [EIF3M]. | 21 | 391 | 18.52887 | IPR027528 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1131 | 1159 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.1 | receptor-like protein kinase 2. | 0 |
| RefSeq | XP_048628406.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Brassica napus] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6GHU4 | Eukaryotic translation initiation factor 3 subunit M OS=Brassica oleracea OX=3712 GN=BOLC1T05918H PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology