Basic Information
Locus ID:
BniB07g061270.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 57371063 | 57373852 | + | BniB07g061270.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 43,501.53 Da | 54.09 | 79.66 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 73 | 7.5905E-31 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 364 | 406 | 2.13825E-23 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 177 | 226 | 1.79803E-30 | - |
| Pfam | PF09280 | XPC-binding domain | 286 | 341 | 3.1E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 183 | 221 | 1.3E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 368 | 403 | 1.0E-10 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 9.0E-19 | IPR000626 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 282 | 348 | 3.79E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 84 | 6.83E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 352 | 410 | 1.66E-14 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 180 | 238 | 2.0E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 176 | 226 | 3.2E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 1.2E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 359 | 407 | 7.4E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 277 | 342 | 4.9E-27 | IPR036353 |
| SMART | SM00165 | uba_6 | 183 | 223 | 1.9E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 368 | 405 | 1.5E-7 | IPR015940 |
| SMART | SM00727 | CBM | 284 | 327 | 1.8E-5 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 411 | 1.0E-111 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.455528 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 365 | 406 | 14.546953 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 181 | 224 | 12.836059 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 394 | 409 | 2.9E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 312 | 334 | 2.9E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 378 | 2.9E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 379 | 393 | 2.9E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 260 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_013735699.2 | ubiquitin receptor RAD23c [Brassica napus] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7P7M3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_085176 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology