Basic Information
Locus ID:
BniB07g060910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 57231695 | 57232189 | - | BniB07g060910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 18,097.06 Da | 36.47 | 84.02 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 93 | 155 | 7.8848E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 19 | 80 | 1.5E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 91 | 154 | 1.5E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 10 | 155 | 7.42E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 86 | 160 | 1.6E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 82 | 3.6E-21 | - |
| SMART | SM00054 | efh_1 | 55 | 83 | 0.084 | IPR002048 |
| SMART | SM00054 | efh_1 | 129 | 157 | 2.9E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 93 | 121 | 8.2E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 19 | 47 | 1.1E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 125 | 160 | 13.732334 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 15 | 50 | 14.736568 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 51 | 86 | 11.444912 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 89 | 124 | 15.768698 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 102 | 114 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 138 | 150 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 64 | 76 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 28 | 40 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_009118979.1 | probable calcium-binding protein CML18 [Brassica rapa] | 0 |
| Q9M8U1 | Probable calcium-binding protein CML18 OS=Arabidopsis thaliana OX=3702 GN=CML18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9JY66 | Calcium-binding protein CML18 OS=Brassica cretica OX=69181 GN=F2Q68_00033274 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology