Basic Information
Locus ID:
BniB07g060620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 57128055 | 57129116 | + | BniB07g060620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 38,645.05 Da | 68.49 | 70.96 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 150 | 193 | 2.43459E-18 | - |
| Pfam | PF13639 | Ring finger domain | 150 | 193 | 1.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 196 | 2.83E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 198 | 1.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 151 | 192 | 2.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 193 | 12.858103 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 124 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03550.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018435101.1 | PREDICTED: RING-H2 finger protein ATL51-like [Raphanus sativus] | 0 |
| Q9SRQ8 | RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6J0JJA7 | RING-type E3 ubiquitin transferase OS=Raphanus sativus OX=3726 GN=LOC108807328 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology