Basic Information
Locus ID:
BniB07g059730.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 56640703 | 56643313 | - | BniB07g059730.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 48,866.50 Da | 58.50 | 91.58 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 236 | 283 | 8.09262E-15 | - |
| Pfam | PF12906 | RING-variant domain | 236 | 282 | 6.3E-13 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 232 | 286 | 3.58E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 290 | 6.6E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 235 | 283 | 1.1E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 228 | 289 | 20.246775 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 236 | 283 | 8.992817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 227 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013619363.1 | PREDICTED: uncharacterized protein LOC106325855 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A8X8B0J2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_021327 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology