Basic Information
Locus ID:
BniB07g059500.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
kinase) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 56513044 | 56517329 | + | BniB07g059500.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 86,273.20 Da | 45.80 | 72.62 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 509 | 755 | 3.07688E-129 | - |
| CDD | cd00130 | PAS | 120 | 218 | 3.29431E-13 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 503 | 755 | 3.6E-67 | IPR001245 |
| Pfam | PF00989 | PAS fold | 112 | 218 | 1.0E-13 | IPR013767 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 478 | 754 | 3.1E-84 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 112 | 218 | 9.07E-21 | IPR035965 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 496 | 580 | 1.8E-30 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 119 | 223 | 1.4E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 581 | 779 | 1.2E-63 | - |
| SMART | SM00220 | serkin_6 | 503 | 761 | 1.8E-55 | IPR000719 |
| SMART | SM00091 | pas_2 | 111 | 177 | 1.4E-7 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 111 | 218 | 9.5E-14 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 503 | 764 | 41.445847 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 109 | 180 | 13.966298 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 622 | 634 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 682 | 704 | 4.1E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 616 | 634 | 4.1E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 726 | 748 | 4.1E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 577 | 590 | 4.1E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 663 | 673 | 4.1E-11 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 42 | - | - |
| Coils | Coil | Coil | 6 | 33 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06620.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_013621790.1 | PREDICTED: serine/threonine-protein kinase BCK1/SLK1/SSP31-like [Brassica oleracea var. oleracea] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7QNN5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068016 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology