Basic Information
Locus ID:
BniB07g059470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 56502058 | 56503797 | - | BniB07g059470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 40,884.67 Da | 52.96 | 60.30 | -1.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 220 | 304 | 2.8E-18 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 321 | 352 | 3.1E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 220 | 305 | 1.3E-25 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 127 | - | - |
| Coils | Coil | Coil | 258 | 280 | - | - |
| Coils | Coil | Coil | 209 | 246 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06660.1 | PAPA-1-like family protein / zinc finger (HIT type) family protein. | 0 |
| RefSeq | XP_013640811.2 | INO80 complex subunit B [Brassica napus] | 0 |
| TrEMBL | A0A8X7UCD7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068019 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology