Basic Information
Locus ID:
BniB07g059240.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 56424945 | 56425958 | - | BniB07g059240.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 37,032.46 Da | 66.29 | 61.69 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 289 | 326 | 7.79203E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 287 | 328 | 4.3E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 269 | 333 | 6.56E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 334 | 7.6E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 289 | 326 | 0.0011 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 289 | 327 | 10.954966 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 282 | - | - |
| Coils | Coil | Coil | 252 | 279 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018438100.1 | PREDICTED: E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8-like [Raphanus sativus] | 0 |
| TrEMBL | A0A8X8B0I5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_021312 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology