Basic Information
Locus ID:
BniB07g058550.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
kinase protein binding protein kinase protein serine threonine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 56110028 | 56111748 | + | BniB07g058550.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 51,040.91 Da | 36.26 | 80.40 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05123 | STKc_AGC | 133 | 382 | 8.87298E-147 | - |
| Pfam | PF00069 | Protein kinase domain | 127 | 382 | 6.4E-77 | IPR000719 |
| Pfam | PF00433 | Protein kinase C terminal domain | 405 | 443 | 1.3E-4 | IPR017892 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 124 | 448 | 6.47E-96 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 124 | 425 | 1.1E-127 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 207 | 401 | 1.1E-127 | - |
| SMART | SM00220 | serkin_6 | 127 | 382 | 2.3E-106 | IPR000719 |
| SMART | SM00133 | pkinase_C_6 | 383 | 445 | 5.0E-17 | IPR000961 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 127 | 382 | 53.219471 | IPR000719 |
| ProSiteProfiles | PS51285 | AGC-kinase C-terminal domain profile. | 383 | 453 | 13.124859 | IPR000961 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 133 | 156 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 246 | 258 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko01522 (Endocrine resistance)
map01522 (Endocrine resistance)
ko04012 (ErbB signaling pathway)
map04012 (ErbB signaling pathway)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04211 (Longevity regulating pathway)
map04211 (Longevity regulating pathway)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08730.1 | protein-serine kinase 1. Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues. | 0 |
| RefSeq | XP_013724102.2 | serine/threonine-protein kinase AtPK1/AtPK6 [Brassica napus] | 0 |
| P42818 | Serine/threonine-protein kinase AtPK1/AtPK6 OS=Arabidopsis thaliana OX=3702 GN=ATPK1 PE=1 SV=1 | 0 | |
| TrEMBL | B3GN40 | Serine/threonine-protein kinase ATPK19/ATPK2 OS=Brassica campestris OX=3711 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10088, jg18681, jg3153, jg34070 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_13730, gene_20434, gene_24396 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah023592, Ah031561, Ah032158 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g038690, BVRB_5g115900, BVRB_7g156780 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg2129, Sbi_jg30103, Sbi_jg30439, Sbi_jg34374 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg18348, Seu_jg2638, Seu_jg28675 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005858, GOSA_00015026 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl51096, Sgl56404, Sgl66110, Sgl70426, Sgl71135, Sgl74718 |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000004609, gene:ENSEOMG00000005292 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0003160, CQ.Regalona.r1.5AG0021830 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30138450, pistato.v30286220 |
| Apiaceae | Apium graveolens | 2 | Ag10G00994, Ag5G00646 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G012410, COCNU_16G005650 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722170 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.674.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G23906, Ftri18G16445, Ftri8G23854 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G08720.1, AT3G08730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020635m.g.v1.0, Thhalv10020669m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g07150.v2.2, Sp3g07160.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g055810.2N, BniB01g055840.2N, BniB07g058550.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1854 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0894 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno11g05810, gene.Cymno14g05330 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0101s00029.v1.0, Dusal.0198s00005.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g06530, gene.Thate08g16400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3730 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG01.852, evm.TU.LG02.1656, evm.TU.LG10.835 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036320 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09538, Lb4G22588, Lb4G25703 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3740, AH03.4073, BH01.4088, BH03.4411, CH01.4352 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0247120, gene-QOZ80_3BG0281130 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0111810.1, HORVU.MOREX.r3.4HG0378900.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017326, gene-QYE76_038716 |
| Poaceae | Oryza coarctata | 4 | Oco05G012830, Oco06G013650, Oco13G015950, Oco14G016760 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g21620.1, LOC_Os07g48290.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G363800, gene-BS78_02G391800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102630, Pt_Chr0305462, Pt_Chr0602301 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G034060, Chr04G010680, Chr07G001260, Chr12G005550 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G227700, Tel4E01G309900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG012420, gene_TRIDC2BG015190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G104500.1, TraesCS2B02G121500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015960_P002, Zm00001eb330740_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1682, nbis-gene-3367, nbis-gene-82 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1263, Zma_g3687, Zma_g7085 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2560, evm.TU.LG07.200, evm.TU.LG10.75 ... |
| Posidoniaceae | Posidonia oceanica | 6 | gene.Posoc01g21120, gene.Posoc01g27120, gene.Posoc02g17380 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.958, evm.TU.Scaffold_2_RagTag.529 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14641, nbisL1-mrna-4662 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20363, nbisL1-mrna-2081 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12530 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.638, evm.TU.utg000010l.71 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005107, Maker00008737 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2622, nbisL1-mrna-787 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16610, nbisL1-mrna-8602 |
| Salicaceae | Populus euphratica | 4 | populus_peu11524, populus_peu25250, populus_peu29985 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132601137, gene-LOC132606721, gene-LOC132611211 |
| Solanaceae | Solanum chilense | 3 | SOLCI000686400, SOLCI006774200, SOLCI007195400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002300, gene-LOC107012474, gene-LOC107023102 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15027, gene_6611 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0055, TC07G0962 |
| Zosteraceae | Zostera marina | 1 | Zosma06g14310.v3.1 |