Basic Information
Locus ID:
BniB07g058460.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 56082578 | 56084918 | - | BniB07g058460.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 63,972.86 Da | 34.40 | 88.04 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 29 | 190 | 9.46313E-91 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 388 | 570 | 9.54455E-87 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 26 | 197 | 4.4E-35 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 433 | 546 | 3.6E-15 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 223 | 338 | 6.5E-22 | IPR012000 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 218 | 365 | 1.22E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 26 | 203 | 6.27E-45 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 388 | 584 | 1.16E-40 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 212 | 375 | 4.3E-44 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 22 | 200 | 1.1E-61 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 382 | 569 | 1.6E-55 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 20 | 582 | 4.5E-212 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 447 | 466 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_013617936.1 | PREDICTED: pyruvate decarboxylase 1-like [Brassica oleracea var. oleracea] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3AF01 | pyruvate decarboxylase OS=Brassica oleracea var. oleracea OX=109376 GN=106324500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology