Basic Information
Locus ID:
BniB07g058390.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 56057772 | 56062965 | + | BniB07g058390.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 118,382.49 Da | 46.56 | 79.52 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 683 | 714 | 0.034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 139 | 0.034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 181 | 0.0054 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 365 | 412 | 0.045 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 399 | 714 | 6.96E-48 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 59 | 506 | 5.96E-32 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 26 | 219 | 1.3E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 447 | 578 | 1.6E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 245 | 446 | 1.9E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 579 | 738 | 2.1E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 631 | 672 | 0.75 | IPR001680 |
| SMART | SM00320 | WD40_4 | 543 | 580 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 628 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 357 | 412 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 539 | 8.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 139 | 7.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 350 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 484 | 0.53 | IPR001680 |
| SMART | SM00320 | WD40_4 | 675 | 714 | 8.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 182 | 0.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 99 | 15.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 399 | 414 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 682 | 715 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 682 | 715 | 8.861059 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 857 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 863 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 974 | 995 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.3 | - | 0 |
| RefSeq | XP_048600757.1 | mitogen-activated protein kinase-binding protein 1-like isoform X2 [Brassica napus] | 0 |
| Q8HXL3 | WD repeat-containing protein 62 OS=Sus scrofa OX=9823 GN=WDR62 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7P879 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_085476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |