Basic Information
Locus ID:
BniB07g057760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 55775144 | 55778180 | + | BniB07g057760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 84,359.26 Da | 51.83 | 83.90 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 541 | 716 | 7.6E-26 | IPR006527 |
| Pfam | PF07734 | F-box associated | 202 | 325 | 2.6E-23 | IPR006527 |
| Pfam | PF00646 | F-box domain | 6 | 47 | 0.0022 | IPR001810 |
| Pfam | PF00646 | F-box domain | 350 | 394 | 5.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 61 | 6.28E-12 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 350 | 407 | 4.32E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 66 | 1.2E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 335 | 444 | 3.0E-6 | - |
| SMART | SM00256 | fbox_2 | 10 | 50 | 6.0E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 354 | 394 | 3.0E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 439 | 667 | 6.3E-33 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 94 | 320 | 6.8E-35 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 51 | 11.643516 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 348 | 395 | 11.961449 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22650.2 | - | 0 |
| RefSeq | XP_013646421.2 | putative F-box only protein 15 [Brassica napus] | 0 |
| Q9LUJ6 | Putative F-box protein At3g22650 OS=Arabidopsis thaliana OX=3702 GN=At3g22650 PE=4 SV=1 | 0 | |
| TrEMBL | A0A8X8B216 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_021209 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT1G77650.1, AT1G77655.1, AT3G08750.1, AT3G10430.1 ... |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10000601m.g.v1.0, Thhalv10015788m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20410.v2.2, Sp6g23470.v2.2 |
| Brassicaceae | Brassica nigra | 17 | BniB01g054610.2N, BniB03g013050.2N, BniB03g013060.2N ... |