Basic Information
Locus ID:
BniB07g057630.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein binding, zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 55729166 | 55732629 | - | BniB07g057630.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 94,765.77 Da | 68.60 | 61.28 | -1.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 781 | 821 | 6.86104E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 779 | 826 | 1.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 781 | 827 | 2.88E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 768 | 832 | 2.3E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 782 | 821 | 10.069786 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 218 | - | - |
| Coils | Coil | Coil | 321 | 341 | - | - |
| Coils | Coil | Coil | 728 | 748 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018441142.1 | PREDICTED: uncharacterized protein LOC108813166 [Raphanus sativus] | 0 |
| TrEMBL | A0A8S9SJS8 | RING-type domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q69_00038839 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology