Basic Information
Locus ID:
BniB07g056750.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 55361630 | 55363285 | + | BniB07g056750.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 49,889.41 Da | 49.96 | 108.91 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 14 | 55 | 2.9839E-19 | - |
| Pfam | PF04564 | U-box domain | 10 | 80 | 1.5E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 82 | 1.06E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 117 | 413 | 5.1E-9 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 86 | 3.7E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 112 | 434 | 2.1E-10 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 13 | 76 | 3.0E-34 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 9 | 83 | 34.004635 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_018440783.1 | PREDICTED: E3 ubiquitin-protein ligase PUB24 [Raphanus sativus] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0JZC5 | RING-type E3 ubiquitin transferase OS=Raphanus sativus OX=3726 GN=LOC108812895 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology