Basic Information
Locus ID:
BniB07g056330.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 55194624 | 55196040 | + | BniB07g056330.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 36,067.20 Da | 39.53 | 61.59 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 86 | 316 | 4.40692E-116 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 22 | 61 | 3.69658E-15 | - |
| Pfam | PF00187 | Chitin recognition protein | 23 | 61 | 3.3E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 85 | 316 | 4.4E-129 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 23 | 71 | 2.75E-12 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 82 | 322 | 3.37E-109 | IPR023346 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 168 | 225 | 5.6E-120 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 21 | 63 | 2.8E-16 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 85 | 317 | 5.6E-120 | - |
| SMART | SM00270 | ChitinBD_3 | 23 | 61 | 4.0E-13 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 323 | 1.1E-123 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 21 | 63 | 10.617323 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 33 | 52 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 229 | 239 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 39 | 46 | 6.7E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 31 | 39 | 6.7E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 46 | 53 | 6.7E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_018437529.1 | PREDICTED: endochitinase CH25-like [Raphanus sativus] | 0 |
| Q09023 | Endochitinase CH25 OS=Brassica napus OX=3708 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VV03 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_021073 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology