Basic Information
Locus ID:
BniB07g055860.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
YT521-B-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 54981415 | 54989835 | - | BniB07g055860.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 131,140.09 Da | 47.15 | 81.77 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04146 | YT521-B-like domain | 961 | 1098 | 2.5E-38 | IPR007275 |
| Pfam | PF00083 | Sugar (and other) transporter | 169 | 356 | 1.2E-33 | IPR005828 |
| Pfam | PF07690 | Major Facilitator Superfamily | 451 | 590 | 9.3E-13 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 125 | 577 | 1.11E-62 | IPR036259 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 19 | 89 | 2.75E-7 | IPR036259 |
| Gene3D | G3DSA:3.10.590.10 | ph1033 like domains | 935 | 1111 | 2.1E-67 | - |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 128 | 580 | 4.9E-77 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 22 | 92 | 1.6E-7 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 134 | 584 | 37.792469 | IPR020846 |
| ProSiteProfiles | PS50882 | YTH domain profile. | 960 | 1097 | 50.7407 | IPR007275 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 462 | 478 | - | IPR005829 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 911 | 951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1121 | 1153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 921 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1179 | 1197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1167 | 1197 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13060.2 | evolutionarily conserved C-terminal region 5. | 0 |
| RefSeq | XP_018441009.1 | PREDICTED: uncharacterized protein LOC108813071 [Raphanus sativus] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A816Y815 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A01P40470.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology