Basic Information
Locus ID:
BniB07g055850.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
START domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 54974908 | 54980331 | - | BniB07g055850.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 109,392.91 Da | 39.72 | 76.91 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08870 | START_STARD2_7-like | 84 | 288 | 7.79251E-101 | - |
| Pfam | PF01852 | START domain | 93 | 258 | 1.3E-8 | IPR002913 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 806 | 916 | 6.3E-12 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 562 | 620 | 2.4E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 452 | 487 | 8.1E-7 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 775 | 980 | 2.61E-25 | IPR011009 |
| SUPERFAMILY | SSF55961 | Bet v1-like | 87 | 288 | 3.85E-33 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 462 | 636 | 8.08E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 915 | 985 | 1.7E-5 | - |
| Gene3D | G3DSA:3.30.530.20 | - | 81 | 290 | 1.0E-40 | IPR023393 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 450 | 558 | 2.4E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 559 | 647 | 3.8E-19 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 770 | 879 | 4.5E-22 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 802 | 986 | 13.446394 | IPR000719 |
| ProSiteProfiles | PS50848 | START domain profile. | 104 | 290 | 25.019976 | IPR002913 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13062.1 | Polyketide cyclase/dehydrase and lipid transport superfamily protein. | 0 |
| RefSeq | XP_033137412.1 | phosphatidylcholine transfer protein [Brassica rapa] | 0 |
| Q6R2K2 | Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana OX=3702 GN=SRF4 PE=2 SV=1 | 0 | |
| TrEMBL | M4FE46 | START domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26034 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6604 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26765, Sbi_jg33795 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8489 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011722 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73630, Sgl77093 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007646, gene:ENSEOMG00000036632 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0008020, CQ.Regalona.r1.9BG0008040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30060650 |
| Apiaceae | Apium graveolens | 1 | Ag6G01341 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G019860 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720895 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3555.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G15010 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55960.1, AT3G13062.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011546m.g.v1.0, Thhalv10020844m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41570.v2.2, Sp3g11220.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g053590.2N, BniB07g026720.2N, BniB07g055850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1025 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1074 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g20990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-669 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1009 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019869 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22599 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.1648, BH07.1709, CH07.1535 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0079990.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G009890, Oco04G010220 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g26860.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_K075600, gene-BS78_K143800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0403310, Pt_Chr0704452 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G011810, Chr06G011820, Chr09G011930, Chr13G013360 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G591800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG053510, gene_TRIDC1BG061310 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G364200.1, TraesCS1B02G381600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb043190_P002, Zm00001eb082000_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19047, nbis-gene-21006 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13496 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG12.533 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.85 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10270 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13125 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17733 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.933 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003337 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3078 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11487 |
| Salicaceae | Populus euphratica | 1 | populus_peu23793 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633610 |
| Solanaceae | Solanum chilense | 1 | SOLCI000515800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014722 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21215_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1857 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19630.v3.1 |