Basic Information
Locus ID:
BniB07g055840.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 54952478 | 54974566 | + | BniB07g055840.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 439,598.19 Da | 42.06 | 103.93 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 1826 | 2120 | 8.68892E-88 | IPR044726 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 3375 | 3669 | 3.31669E-94 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1215 | 1502 | 1.29012E-87 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 3692 | 3912 | 7.39246E-120 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 2760 | 3045 | 4.62896E-98 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 2143 | 2363 | 3.44408E-121 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 416 | 636 | 6.77865E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 1528 | 1728 | 3.57136E-93 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 99 | 393 | 2.31218E-86 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 3071 | 3271 | 8.28581E-92 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 2762 | 3024 | 9.0E-20 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1546 | 1680 | 1.4E-19 | IPR003439 |
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 872 | 964 | 1.7E-29 | IPR027486 |
| Pfam | PF00005 | ABC transporter | 3711 | 3859 | 4.9E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 3089 | 3223 | 4.6E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 2162 | 2310 | 1.6E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1829 | 2070 | 3.5E-26 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 102 | 343 | 3.0E-26 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1214 | 1481 | 2.2E-18 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 3378 | 3617 | 3.2E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 435 | 583 | 9.4E-30 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2137 | 2371 | 3.45E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 2747 | 3056 | 4.71E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 410 | 644 | 1.28E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1202 | 1506 | 3.27E-27 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1828 | 2126 | 7.46E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 3686 | 3919 | 4.55E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 3375 | 3676 | 1.7E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 3070 | 3293 | 1.74E-53 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 101 | 399 | 1.31E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1525 | 1750 | 2.23E-56 | IPR027417 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 870 | 964 | 7.19E-31 | IPR036838 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 3339 | 3675 | 2.5E-61 | IPR036640 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 857 | 966 | 6.2E-37 | IPR036838 |
| Gene3D | G3DSA:3.40.50.300 | - | 1510 | 1767 | 3.2E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1185 | 1509 | 9.0E-43 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 61 | 399 | 5.8E-58 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 2735 | 3055 | 2.2E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 3056 | 3306 | 1.8E-72 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1788 | 2126 | 7.5E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 2128 | 2381 | 2.8E-81 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 401 | 654 | 9.8E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 3677 | 3930 | 2.2E-78 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1555 | 1728 | 1.7E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 3098 | 3271 | 6.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 3720 | 3912 | 1.2E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 444 | 629 | 8.2E-13 | IPR003593 |
| SMART | SM01403 | Ribosomal_S10_2 | 872 | 966 | 1.3E-47 | IPR027486 |
| SMART | SM00382 | AAA_5 | 2171 | 2356 | 4.6E-13 | IPR003593 |
| TIGRFAM | TIGR01049 | rpsJ_bact: ribosomal protein uS10 | 869 | 964 | 2.8E-36 | IPR001848 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 2145 | 2379 | 17.126986 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1828 | 2108 | 36.875751 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 418 | 652 | 17.140326 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 101 | 381 | 36.5354 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 3377 | 3657 | 39.117504 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 2759 | 3037 | 29.967966 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1214 | 1494 | 25.879955 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 3071 | 3294 | 22.462427 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1528 | 1751 | 22.502443 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 3696 | 3928 | 18.467516 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 1653 | 1667 | - | IPR017871 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 3196 | 3210 | - | IPR017871 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 894 | 909 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 870 | 883 | 3.9E-11 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 926 | 940 | 3.9E-11 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 905 | 920 | 3.9E-11 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 868 | 967 | 22.999926 | IPR001848 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3329 | 3349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3327 | 3349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1776 | 1802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1763 | 1802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2548 | 2581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2642 | 2674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2548 | 2576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2660 | 2674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 75 | - | - |
| Coils | Coil | Coil | 2545 | 2565 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13090.1 | multidrug resistance-associated protein 8. member of MRP subfamily | 0 |
| RefSeq | XP_018439514.1 | PREDICTED: ABC transporter C family member 6-like [Raphanus sativus] | 0 |
| Q8VZZ4 | ABC transporter C family member 6 OS=Arabidopsis thaliana OX=3702 GN=ABCC6 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2H5P5L2 | ABC-type xenobiotic transporter (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_106090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology