Basic Information
Locus ID:
BniB07g055670.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 54896616 | 54898959 | - | BniB07g055670.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 49,283.01 Da | 43.76 | 113.73 | 0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01699 | Sodium/calcium exchanger protein | 107 | 262 | 1.5E-21 | IPR004837 |
| Pfam | PF01699 | Sodium/calcium exchanger protein | 297 | 436 | 3.1E-18 | IPR004837 |
| Gene3D | G3DSA:1.20.1420.30 | - | 136 | 273 | 3.4E-15 | IPR044880 |
| Gene3D | G3DSA:1.20.1420.30 | - | 283 | 440 | 1.9E-19 | IPR044880 |
| TIGRFAM | TIGR00378 | cax: calcium/proton exchanger | 88 | 439 | 1.6E-102 | IPR004798 |
| TIGRFAM | TIGR00846 | caca2: calcium/proton exchanger | 72 | 439 | 1.9E-121 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 46 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13320.1 | cation exchanger 2. low affinity calcium antiporter CAX2 | 0 |
| RefSeq | XP_013673237.1 | vacuolar cation/proton exchanger 2 [Brassica napus] | 0 |
| Q39254 | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana OX=3702 GN=CAX2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VUK4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_021008 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology