Basic Information
Locus ID:
BniB07g055110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 54598593 | 54601265 | - | BniB07g055110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 46,187.18 Da | 44.59 | 66.87 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 260 | 335 | 4.51313E-31 | - |
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 1.48315E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 9.97373E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 2.9E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 1.0E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 321 | 6.3E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 52 | 217 | 1.83E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 246 | 339 | 5.29E-19 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 136 | 9.1E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 218 | 3.5E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 238 | 339 | 1.4E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 1.9E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 3.0E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 261 | 331 | 2.9E-14 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 18.359171 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 335 | 14.641094 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 15.391531 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 254 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_018434071.1 | PREDICTED: oligouridylate-binding protein 1C [Raphanus sativus] | 0 |
| Q9LJH8 | Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7P0C2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_096418 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology