Basic Information
Locus ID:
BniB07g054950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 54510893 | 54517297 | - | BniB07g054950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 196,899.02 Da | 52.17 | 76.24 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17300 | PIPKc_PIKfyve | 1456 | 1719 | 4.80307E-148 | IPR044769 |
| CDD | cd03334 | Fab1_TCP | 379 | 648 | 5.83976E-137 | - |
| Pfam | PF01363 | FYVE zinc finger | 35 | 102 | 6.2E-16 | IPR000306 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 401 | 637 | 1.2E-33 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1495 | 1662 | 4.7E-32 | IPR002498 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 445 | 614 | 3.14E-42 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1455 | 1719 | 2.22E-75 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 33 | 104 | 1.34E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 109 | 3.0E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 444 | 614 | 5.8E-54 | IPR027409 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1411 | 1576 | 4.8E-35 | IPR027484 |
| Gene3D | G3DSA:3.30.810.10 | - | 1579 | 1720 | 3.2E-40 | - |
| SMART | SM00330 | PIPK_2 | 1429 | 1720 | 5.7E-118 | IPR002498 |
| SMART | SM00064 | fyve_4 | 30 | 105 | 1.4E-18 | IPR000306 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1398 | 1719 | 56.144936 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 38 | 104 | 12.925982 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1141 | 1200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 769 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1141 | 1155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1731 | 1753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 792 | - | - |
| Coils | Coil | Coil | 1068 | 1099 | - | - |
| Coils | Coil | Coil | 820 | 840 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_018440431.1 | PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like isoform X1 [Raphanus sativus] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0JY87 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Raphanus sativus OX=3726 GN=LOC108812623 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology