Basic Information
Locus ID:
BniB07g054320.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBC25
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 54235361 | 54238016 | - | BniB07g054320.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 67,476.14 Da | 47.82 | 65.89 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 340 | 467 | 7.24131E-34 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 342 | 487 | 1.5E-23 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 324 | 506 | 1.31E-41 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 300 | 572 | 4.9E-84 | IPR016135 |
| SMART | SM00212 | ubc_7 | 341 | 498 | 3.3E-20 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 338 | 498 | 37.269165 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 585 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 191 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15355.1 | ubiquitin-conjugating enzyme 25. | 0 |
| RefSeq | XP_018439750.1 | PREDICTED: probable ubiquitin-conjugating enzyme E2 25 [Raphanus sativus] | 0 |
| Q9LUQ5 | Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VUF2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020933 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology