Basic Information
Locus ID:
BniB07g053910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 54067025 | 54073225 | + | BniB07g053910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 123,939.09 Da | 41.30 | 79.78 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 922 | 955 | 0.0053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 535 | 0.097 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 8.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 415 | 995 | 1.18E-50 | IPR011047 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 924 | 1111 | 1.83E-16 | - |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 346 | 448 | 2.2E-6 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 975 | 1125 | 1.5E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 752 | 974 | 3.7E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 548 | 684 | 4.9E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 316 | 547 | 3.5E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 5.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1066 | 1100 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 913 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 582 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1007 | 1048 | 60.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 833 | 870 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 34.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.8E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 3.4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 8.5E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 916 | 955 | 1.2E-5 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.801913 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 923 | 964 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 923 | 957 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.041927 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_048595040.1 | topless-related protein 4-like [Brassica napus] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VU73 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020898 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology