Basic Information
Locus ID:
BniB07g053710.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 53974587 | 53978028 | - | BniB07g053710.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 100,530.17 Da | 44.83 | 85.50 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 566 | 833 | 8.40004E-84 | - |
| CDD | cd00028 | B_lectin | 32 | 162 | 4.43409E-28 | IPR001480 |
| Pfam | PF01453 | D-mannose binding lectin | 84 | 187 | 7.1E-28 | IPR001480 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 564 | 832 | 2.4E-45 | IPR001245 |
| Pfam | PF08276 | PAN-like domain | 383 | 415 | 1.3E-8 | IPR003609 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 543 | 834 | 1.07E-79 | IPR011009 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 84 | 180 | 1.44E-16 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 636 | 840 | 4.2E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 533 | 635 | 1.9E-34 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 21 | 159 | 9.3E-13 | IPR036426 |
| SMART | SM00220 | serkin_6 | 560 | 835 | 1.5E-28 | IPR000719 |
| SMART | SM00108 | blect_4 | 31 | 162 | 4.9E-32 | IPR001480 |
| PIRSF | PIRSF000641 | SRK | 1 | 881 | 2.3E-228 | IPR024171 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 25 | 155 | 13.195135 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 352 | 425 | 7.216006 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 560 | 847 | 36.089062 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 681 | 693 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16030.6 | - | 0 |
| RefSeq | XP_018440396.1 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Raphanus sativus] | 0 |
| Q9LW83 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana OX=3702 GN=CES101 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7VUL6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020878 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah018508 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044267 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30036830, pistato.v30036880, pistato.v30036890 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67520.1, AT3G16030.1 |
| Brassicaceae | Brassica nigra | 3 | BniB01g048880.2N, BniB03g025090.2N, BniB07g053710.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005846 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.496 |
| Rhizophoraceae | Carallia pectinifolia | 8 | nbisL1-mrna-27876, nbisL1-mrna-27877, nbisL1-mrna-27878 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10731, nbisL1-mrna-10732 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7927 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21281 |