Basic Information
Locus ID:
BniB07g053140.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 53722272 | 53725555 | - | BniB07g053140.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 56,364.49 Da | 67.03 | 73.82 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 362 | 405 | 1.57157E-19 | - |
| CDD | cd16461 | RING-H2_EL5_like | 113 | 155 | 5.03093E-19 | - |
| Pfam | PF13639 | Ring finger domain | 362 | 405 | 5.2E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 113 | 155 | 2.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 411 | 4.29E-21 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 162 | 2.35E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 160 | 3.7E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 328 | 410 | 3.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 363 | 404 | 1.1E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 113 | 154 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 155 | 12.533537 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 363 | 405 | 12.25323 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_013589802.1 | PREDICTED: RING-H2 finger protein ATL2-like [Brassica oleracea var. oleracea] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8S9GCK9 | RING-type E3 ubiquitin transferase OS=Brassica cretica OX=69181 GN=F2Q68_00032501 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology