Basic Information
Locus ID:
BniB07g053080.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Topless-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 53694152 | 53699644 | - | BniB07g053080.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 125,741.14 Da | 42.50 | 78.91 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 454 | 488 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 913 | 946 | 0.024 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 521 | 1095 | 7.14E-38 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 352 | 662 | 1.37E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 316 | 580 | 5.3E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 592 | 726 | 1.9E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 967 | 1109 | 3.5E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 752 | 966 | 3.8E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 17.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.6E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.6E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 905 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 997 | 1039 | 0.66 | IPR001680 |
| SMART | SM00320 | WD40_4 | 821 | 862 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 908 | 947 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 447 | 488 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 442 | 9.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 381 | 0.14 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 454 | 497 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 598 | 629 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.163201 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.986664 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 946 | 9.230148 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 956 | 11.477578 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 475 | 489 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1114 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1108 | 1136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_009114175.2 | topless-related protein 2 [Brassica rapa] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VUB5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020873 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology