Basic Information
Locus ID:
BniB07g052250.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 53295330 | 53300094 | + | BniB07g052250.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 88,108.94 Da | 42.42 | 94.61 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 583 | 743 | 3.6E-37 | IPR006527 |
| Pfam | PF07734 | F-box associated | 251 | 381 | 1.1E-28 | IPR006527 |
| Pfam | PF00646 | F-box domain | 399 | 437 | 3.0E-8 | IPR001810 |
| Pfam | PF00646 | F-box domain | 73 | 113 | 1.8E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 70 | 162 | 1.83E-16 | IPR036047 |
| SUPERFAMILY | SSF52507 | Homo-oligomeric flavin-containing Cys decarboxylases, HFCD | 1 | 57 | 5.49E-10 | IPR036551 |
| SUPERFAMILY | SSF81383 | F-box domain | 399 | 478 | 1.57E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 61 | 110 | 1.8E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 388 | 436 | 1.1E-7 | - |
| Gene3D | G3DSA:3.40.50.1950 | - | 1 | 60 | 3.2E-15 | IPR036551 |
| SMART | SM00256 | fbox_2 | 74 | 114 | 8.8E-10 | IPR001810 |
| SMART | SM00256 | fbox_2 | 400 | 440 | 4.4E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 486 | 718 | 9.9E-41 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 248 | 373 | 3.9E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 68 | 114 | 11.272594 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 394 | 440 | 10.424773 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17310.1 | F-box and associated interaction domains-containing protein. Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistance | 0 |
| RefSeq | XP_048594435.1 | protein SUPPRESSOR OF NIM1 1-like [Brassica napus] | 0 |
| Q8LL17 | Protein SUPPRESSOR OF NIM1 1 OS=Arabidopsis thaliana OX=3702 GN=SON1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8AYU7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020801 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 22 | AT1G12170.1, AT1G12190.1, AT1G32430.1, AT1G47390.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10002898m.g.v1.0, Thhalv10006465m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27690.v2.2, Sp5g16370.v2.2 |
| Brassicaceae | Brassica nigra | 23 | BniB01g008560.2N, BniB01g010040.2N, BniB01g047060.2N ... |