Basic Information
Locus ID:
BniB07g052090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 53201806 | 53207201 | - | BniB07g052090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 139,889.38 Da | 50.82 | 74.72 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1118 | 1160 | 3.04435E-17 | - |
| CDD | cd12108 | Hr-like | 311 | 440 | 2.17972E-19 | - |
| CDD | cd12108 | Hr-like | 650 | 808 | 4.43508E-26 | - |
| CDD | cd12108 | Hr-like | 52 | 177 | 7.69326E-30 | - |
| Pfam | PF13639 | Ring finger domain | 1118 | 1160 | 1.6E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 990 | 1065 | 5.2E-17 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 54 | 179 | 3.8E-8 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1166 | 1223 | 4.3E-24 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 308 | 442 | 2.7E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 646 | 809 | 1.2E-6 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1118 | 1166 | 1.19E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1056 | 1112 | 1.31E-14 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 982 | 1046 | 7.98E-18 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 1190 | 1232 | 6.9E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 47 | 197 | 1.6E-25 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 642 | 877 | 1.8E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1112 | 1162 | 7.0E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 309 | 458 | 2.7E-16 | - |
| SMART | SM00184 | ring_2 | 1119 | 1160 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 983 | 1052 | 25.298092 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1055 | 1118 | 29.410564 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1119 | 1160 | 11.323791 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 900 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_018438581.1 | PREDICTED: uncharacterized protein LOC108811017 [Raphanus sativus] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VTN7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020776 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology