Basic Information
Locus ID:
BniB07g049970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 52149670 | 52152664 | - | BniB07g049970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 39,070.86 Da | 50.67 | 67.11 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 349 | 3.22E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 33 | 355 | 1.8E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 102 | 142 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 268 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 318 | 355 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 29 | 64 | 4.2 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 10 | 188 | 1.2E-56 | IPR000009 |
| PIRSF | PIRSF037309 | PPA2_B55 | 203 | 356 | 4.4E-44 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 102 | 116 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 43 | 63 | 9.5E-38 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 118 | 146 | 9.5E-38 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 89 | 117 | 9.5E-38 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 304 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51690.2 | protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform. 55 kDa B regulatory subunit of phosphatase 2A mRNA, | 0 |
| RefSeq | XP_018459584.1 | PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like [Raphanus sativus] | 0 |
| Q38821 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7VTE0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020596 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology