Basic Information
Locus ID:
BniB07g049110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains Protein kinase, catalytic domain (InterPro IPR000719), Serine-threonine tyrosine-protein kinase (InterPro IPR001245), Serine threonine protein kinase-like, ATMRK (InterPro IPR015783), Protein kinase-like domain (InterPro IPR011009), Serine threonine-protein kinase, active site (InterPro IPR008271)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 51697500 | 51699298 | + | BniB07g049110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.48 | 42,528.18 Da | 35.12 | 77.62 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 80 | 349 | 1.92027E-112 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 74 | 349 | 1.2E-60 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 50 | 349 | 4.99E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 177 | 360 | 5.8E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 63 | 156 | 1.0E-19 | - |
| SMART | SM00220 | serkin_6 | 74 | 349 | 2.7E-60 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 74 | 352 | 41.827465 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 216 | 228 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 276 | 298 | 1.1E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 210 | 228 | 1.1E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 172 | 185 | 1.1E-16 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 320 | 342 | 1.1E-16 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22750.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_013609362.1 | PREDICTED: serine/threonine-protein kinase HT1-like [Brassica oleracea var. oleracea] | 0 |
| Q9SSA4 | Serine/threonine-protein kinase 54 OS=Arabidopsis thaliana OX=3702 GN=CBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VTX1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020503 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology