Basic Information
Locus ID:
BniB07g048850.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ring finger
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 51474892 | 51475761 | - | BniB07g048850.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 22,887.69 Da | 42.77 | 73.43 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.10.20.90 | - | 100 | 203 | 4.6E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 111 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23060.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018436568.1 | PREDICTED: probable E3 ubiquitin protein ligase DRIPH isoform X4 [Raphanus sativus] | 0 |
| Q9LS86 | Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana OX=3702 GN=At3g23060 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B1D6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020474 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G23060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022423m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20730.v2.2, Sp3g20740.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g025000.2N, BniB03g025060.2N, BniB03g025070.2N ... |