Basic Information
Locus ID:
BniB07g047770.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 50798248 | 50801994 | + | BniB07g047770.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 91,036.78 Da | 47.29 | 92.74 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 478 | 686 | 3.4E-48 | IPR003690 |
| Pfam | PF02536 | mTERF | 80 | 259 | 4.3E-44 | IPR003690 |
| Pfam | PF02536 | mTERF | 258 | 351 | 5.3E-29 | IPR003690 |
| Pfam | PF02536 | mTERF | 673 | 785 | 1.5E-32 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 451 | 793 | 3.6E-43 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 173 | 361 | 1.2E-30 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 46 | 172 | 2.0E-15 | IPR038538 |
| SMART | SM00733 | mt_12 | 301 | 332 | 0.12 | IPR003690 |
| SMART | SM00733 | mt_12 | 269 | 300 | 1.2 | IPR003690 |
| SMART | SM00733 | mt_12 | 662 | 692 | 9.3E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 627 | 657 | 15.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 492 | 523 | 0.34 | IPR003690 |
| SMART | SM00733 | mt_12 | 130 | 162 | 300.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 526 | 558 | 2000.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 202 | 231 | 2100.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 94 | 125 | 0.0015 | IPR003690 |
| SMART | SM00733 | mt_12 | 729 | 763 | 4.2 | IPR003690 |
| SMART | SM00733 | mt_12 | 235 | 266 | 3000.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 697 | 728 | 0.062 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61990.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_018434948.1 | PREDICTED: transcription termination factor MTERF2, chloroplastic-like [Raphanus sativus] | 0 |
| TrEMBL | A0A6D2ILC0 | Transcription termination factor MTERF8, chloroplastic-like OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS17084 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |