Basic Information
Locus ID:
BniB07g047230.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B7 | 50370853 | 50377112 | + | BniB07g047230.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.31 | 117,474.30 Da | 49.22 | 81.78 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 293 | 2.39007E-67 | - |
| Pfam | PF13925 | con80 domain of Katanin | 910 | 1068 | 3.2E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 3.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 128 | 5.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 2.2E-10 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 293 | 3.66E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 132 | 259 | 5.5E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 131 | 3.6E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.083 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 5.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.0042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 7.1E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.0098 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 2.0E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 15.220417 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.922852 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 18.027546 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.34136 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.525585 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.955617 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 115 | 129 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 8.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 8.5E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 8.5E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 1071 | 19.245251 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 578 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_009104469.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Brassica rapa] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7VSY4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_020326 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology